Free web tools built on integrative analysis of multi-omics data, to help you find miRNA–target interactions worth testing in the lab.
Atlas of miRNA–gene correlations across cancer types. Browse miRNA–target interactions from integrative analysis of TCGA samples and use them as a starting point for targeted hypotheses and functional experiments.
Open AmiCaHow to cite
Hauptman N., Pižem J. & Jevšinek Skok D. AmiCa: Atlas of miRNA-gene correlations in cancer. Comput Struct Biotechnol J 23, 2277–2288 (2024). doi:10.1016/j.csbj.2024.05.030
Knowledge base of miRNA and mRNA expression in colorectal cancer. Look up expression of miRNAs and their target genes and how strongly they correlate.
Open miRNA colorectal cancerHow to cite
Jevšinek Skok D., Hauptman N., Boštjančič E. & Zidar N. The integrative knowledge base for miRNA-mRNA expression in colorectal cancer. Sci Rep 9, 18065 (2019). doi:10.1038/s41598-019-54358-w
OMICS.si brings together bioinformatics studies that combine molecular biology, applied informatics and statistics. We integrate genomic, transcriptomic, proteomic and epigenomic data to better understand the molecular background of complex phenotypes.
All tools are free to use for academic research.